3D structure

PDB id
6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6CFL|1|1A|G|1746
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFL_067 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.0366
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

6CFL|1|1A|C|1733
6CFL|1|1A|G|1734
6CFL|1|1A|U|1735
6CFL|1|1A|A|1736
6CFL|1|1A|A|1737
6CFL|1|1A|C|1738
*
6CFL|1|1A|G|1743
6CFL|1|1A|G|1744
6CFL|1|1A|A|1745
6CFL|1|1A|G|1746
6CFL|1|1A|A|1747
6CFL|1|1A|A|1748
6CFL|1|1A|G|1749

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2
Chain 1a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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