3D structure

PDB id
6CFL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
6CFL|1|2A|A|1938, 6CFL|1|2A|U|1944, 6CFL|1|2A|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFL_250 not in the Motif Atlas
Homologous match to IL_7RQB_077
Geometric discrepancy: 0.0473
The information below is about IL_7RQB_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6CFL|1|2A|C|1934
6CFL|1|2A|G|1935
6CFL|1|2A|A|1936
6CFL|1|2A|A|1937
6CFL|1|2A|A|1938
6CFL|1|2A|5MU|1939
6CFL|1|2A|U|1940
6CFL|1|2A|C|1941
6CFL|1|2A|5MC|1942
6CFL|1|2A|U|1943
6CFL|1|2A|U|1944
6CFL|1|2A|G|1945
*
6CFL|1|2A|C|1961
6CFL|1|2A|5MC|1962
6CFL|1|2A|U|1963
6CFL|1|2A|G|1964

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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