IL_6CFL_258

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

6CFL|1|2A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFL_258 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.4087

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|G|2110
6CFL|1|2A|C|2111
6CFL|1|2A|G|2112
6CFL|1|2A|U|2113
6CFL|1|2A|A|2114
6CFL|1|2A|G|2115
6CFL|1|2A|G|2116
6CFL|1|2A|A|2117
6CFL|1|2A|U|2118
6CFL|1|2A|A|2119
6CFL|1|2A|G|2120
*
6CFL|1|2A|C|2178
6CFL|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains