IL_6CFL_364

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGUGCCCCGCGAGGGGAGCC

Length

25 nucleotides

Bulged bases

6CFL|1|2a|G|1003, 6CFL|1|2a|G|1026, 6CFL|1|2a|C|1030|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2a|G|1002
6CFL|1|2a|G|1003
6CFL|1|2a|A|1004
6CFL|1|2a|A|1005
6CFL|1|2a|C|1006
*
6CFL|1|2a|G|1023
6CFL|1|2a|G|1024
6CFL|1|2a|U|1025
6CFL|1|2a|G|1026
6CFL|1|2a|C|1027
6CFL|1|2a|C|1028
6CFL|1|2a|C|1029
6CFL|1|2a|C|1030
6CFL|1|2a|G|1030|||A
6CFL|1|2a|C|1030|||B
6CFL|1|2a|G|1030|||C
6CFL|1|2a|A|1030|||D
6CFL|1|2a|G|1031
6CFL|1|2a|G|1032
6CFL|1|2a|G|1033
6CFL|1|2a|G|1034
6CFL|1|2a|A|1035
6CFL|1|2a|G|1036
6CFL|1|2a|C|1037
6CFL|1|2a|C|1038

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains