IL_6CHR_009

3D structure

PDB id

6CHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron lariat with an intact 3' splice site (pre-2s state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGGAAG*CAGACUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CHR|1|A|A|429
6CHR|1|A|G|430
6CHR|1|A|G|431
6CHR|1|A|A|432
6CHR|1|A|A|433
6CHR|1|A|G|434
*
6CHR|1|A|C|491
6CHR|1|A|A|492
6CHR|1|A|G|493
6CHR|1|A|A|494
6CHR|1|A|C|495
6CHR|1|A|U|496
6CHR|1|A|U|497

Current chains

Chain A

RNA (621-MER)

Nearby chains