IL_6CY4_003
3D structure
- PDB id
- 6CY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.85 Å
Loop
- Sequence
- AA(UOB)U*AA(UOB)U
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CY4_003 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.3613
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
6CY4|1|E|A|3
6CY4|1|E|A|4
6CY4|1|E|UOB|5
6CY4|1|E|U|6
*
6CY4|1|F|A|3
6CY4|1|F|A|4
6CY4|1|F|UOB|5
6CY4|1|F|U|6
Current chains
- Chain E
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')
- Chain F
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')
Nearby chains
- Chain A
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')
- Chain G
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')
- Chain H
- RNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')
Coloring options: