IL_6CYT_001

3D structure

PDB id

6CYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6CYT|1|N|A|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6CYT|1|N|C|29
6CYT|1|N|C|30
*
6CYT|1|N|G|34
6CYT|1|N|A|35
6CYT|1|N|G|36

Current chains

Chain N

RNA (5'-R(P*AP*UP*CP*UP*GP*AP*GP*CP*CP*UP*GP*GP*GP*AP*GP*CP*U)-3')

Nearby chains

Chain B

Cyclin-T1

Chain D

Protein Tat