IL_6CZR_043

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6CZR|1|1A|G|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_043 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1178

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6CZR|1|1A|C|1240
6CZR|1|1A|G|1241
6CZR|1|1A|U|1242
*
6CZR|1|1A|A|1292
6CZR|1|1A|G|1293
6CZR|1|1A|U|1294
6CZR|1|1A|G|1295

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15

Chain 1U

50S ribosomal protein L20