IL_6CZR_044

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

6CZR|1|1A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_044 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1115

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6CZR|1|1A|C|1246
6CZR|1|1A|G|1247
6CZR|1|1A|A|1248
6CZR|1|1A|U|1249
6CZR|1|1A|G|1250
*
6CZR|1|1A|U|1285
6CZR|1|1A|A|1286
6CZR|1|1A|A|1287
6CZR|1|1A|G|1288

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15