IL_6CZR_094

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6CZR|1|1A|G|2587, 6CZR|1|1A|A|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_094 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1094

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6CZR|1|1A|C|2521
6CZR|1|1A|U|2522
6CZR|1|1A|C|2523
*
6CZR|1|1A|G|2585
6CZR|1|1A|C|2586
6CZR|1|1A|G|2587
6CZR|1|1A|A|2588
6CZR|1|1A|G|2589

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3