IL_6CZR_123

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6CZR|1|1a|U|240, 6CZR|1|1a|C|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6CZR|1|1a|C|238
6CZR|1|1a|A|239
6CZR|1|1a|U|240
6CZR|1|1a|C|241
6CZR|1|1a|A|242
6CZR|1|1a|G|243
*
6CZR|1|1a|C|273
6CZR|1|1a|G|274
6CZR|1|1a|A|275
6CZR|1|1a|C|276
6CZR|1|1a|G|277
6CZR|1|1a|A|278
6CZR|1|1a|C|279
6CZR|1|1a|G|280

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12

Chain 1q

30S ribosomal protein S17