3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6CZR|1|1a|A|516, 6CZR|1|1a|U|518, 6CZR|1|1a|A|519
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.3
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6CZR|1|1a|G|499
6CZR|1|1a|PSU|500
6CZR|1|1a|G|501
6CZR|1|1a|C|502
6CZR|1|1a|C|503
6CZR|1|1a|A|504
6CZR|1|1a|G|505
*
6CZR|1|1a|C|512
6CZR|1|1a|G|513
6CZR|1|1a|G|514
6CZR|1|1a|U|515
6CZR|1|1a|A|516
6CZR|1|1a|A|517
6CZR|1|1a|U|518
6CZR|1|1a|A|519
6CZR|1|1a|C|520

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1d
30S ribosomal protein S4
Chain 1l
30S ribosomal protein S12

Coloring options:

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