IL_6CZR_133

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6CZR|1|1a|A|516, 6CZR|1|1a|U|518, 6CZR|1|1a|A|519

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6CZR|1|1a|G|499
6CZR|1|1a|PSU|500
6CZR|1|1a|G|501
6CZR|1|1a|C|502
6CZR|1|1a|C|503
6CZR|1|1a|A|504
6CZR|1|1a|G|505
*
6CZR|1|1a|C|512
6CZR|1|1a|G|513
6CZR|1|1a|G|514
6CZR|1|1a|U|515
6CZR|1|1a|A|516
6CZR|1|1a|A|517
6CZR|1|1a|U|518
6CZR|1|1a|A|519
6CZR|1|1a|C|520

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1d

30S ribosomal protein S4

Chain 1l

30S ribosomal protein S12