IL_6CZR_139

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.6

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

28

Unit IDs

6CZR|1|1a|G|638
6CZR|1|1a|A|639
*
6CZR|1|1a|U|735
6CZR|1|1a|G|736
6CZR|1|1a|A|737
6CZR|1|1a|C|738

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1h

30S ribosomal protein S8

Chain 1o

30S ribosomal protein S15

Chain 1q

30S ribosomal protein S17