IL_6CZR_146

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGAGUACGG*CUGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

9x7 Sarcin-Ricin with inserted C; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_68633.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6CZR|1|1a|G|865
6CZR|1|1a|G|866
6CZR|1|1a|A|867
6CZR|1|1a|G|868
6CZR|1|1a|U|869
6CZR|1|1a|A|870
6CZR|1|1a|C|871
6CZR|1|1a|G|872
6CZR|1|1a|G|873
*
6CZR|1|1a|C|882
6CZR|1|1a|U|883
6CZR|1|1a|G|884
6CZR|1|1a|A|885
6CZR|1|1a|A|886
6CZR|1|1a|A|887
6CZR|1|1a|C|888

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1l

30S ribosomal protein S12

Chain 1q

30S ribosomal protein S17