IL_6CZR_158

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

6CZR|1|1a|U|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6CZR|1|1a|G|1107
6CZR|1|1a|U|1108
6CZR|1|1a|U|1109
6CZR|1|1a|G|1110
*
6CZR|1|1a|C|1128
6CZR|1|1a|A|1129
6CZR|1|1a|C|1130
6CZR|1|1a|U|1131
6CZR|1|1a|C|1132

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10