IL_6CZR_169

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6CZR|1|1a|G|1399
6CZR|1|1a|G|1400
6CZR|1|1a|A|1401
6CZR|1|1a|G|1402
*
6CZR|1|1a|U|1459
6CZR|1|1a|G|1460
6CZR|1|1a|A|1461
6CZR|1|1a|C|1462

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA