IL_6CZR_170

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.4

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

6CZR|1|1a|C|1414
6CZR|1|1a|G|1415
6CZR|1|1a|A|1416
6CZR|1|1a|A|1417
6CZR|1|1a|G|1418
*
6CZR|1|1a|C|1444
6CZR|1|1a|G|1445
6CZR|1|1a|A|1446
6CZR|1|1a|G|1447

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20