3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CZR_179 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.119
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6CZR|1|2A|U|227
6CZR|1|2A|G|228
6CZR|1|2A|A|229
6CZR|1|2A|G|230
6CZR|1|2A|U|231
6CZR|1|2A|A|232
6CZR|1|2A|G|233
*
6CZR|1|2A|C|241
6CZR|1|2A|G|242
6CZR|1|2A|A|243
6CZR|1|2A|A|244
6CZR|1|2A|A|245
6CZR|1|2A|G|246

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 28
50S ribosomal protein L35
Chain 2P
50S ribosomal protein L15

Coloring options:


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