IL_6CZR_208

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6CZR|1|2A|U|1186, 6CZR|1|2A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_208 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1329

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6CZR|1|2A|C|1063
6CZR|1|2A|U|1064
6CZR|1|2A|A|1065
6CZR|1|2A|A|1066
6CZR|1|2A|G|1067
6CZR|1|2A|U|1068
6CZR|1|2A|G|1069
*
6CZR|1|2A|C|1184
6CZR|1|2A|U|1185
6CZR|1|2A|U|1186
6CZR|1|2A|A|1187
6CZR|1|2A|A|1188
6CZR|1|2A|G|1189

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13