IL_6CZR_217

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_217 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.086

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6CZR|1|2A|A|1307
6CZR|1|2A|U|1308
6CZR|1|2A|G|1309
6CZR|1|2A|A|1310
6CZR|1|2A|G|1311
6CZR|1|2A|U|1312
6CZR|1|2A|A|1313
6CZR|1|2A|A|1314
*
6CZR|1|2A|U|2032
6CZR|1|2A|G|2033
6CZR|1|2A|A|2034
6CZR|1|2A|A|2035
6CZR|1|2A|A|2036
6CZR|1|2A|U|2037
6CZR|1|2A|U|2038

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22