IL_6CZR_238

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6CZR|1|2A|G|1831, 6CZR|1|2A|G|1846, 6CZR|1|2A|U|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_238 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1024

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6CZR|1|2A|U|1828
6CZR|1|2A|G|1829
6CZR|1|2A|C|1830
6CZR|1|2A|G|1831
6CZR|1|2A|A|1832
6CZR|1|2A|A|1833
6CZR|1|2A|C|1834
*
6CZR|1|2A|G|1843
6CZR|1|2A|G|1844
6CZR|1|2A|A|1845
6CZR|1|2A|G|1846
6CZR|1|2A|G|1847
6CZR|1|2A|U|1848
6CZR|1|2A|A|1849
6CZR|1|2A|U|1850
6CZR|1|2A|A|1851

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA