3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
6CZR|1|2A|G|2137, 6CZR|1|2A|A|2140
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CZR_253 not in the Motif Atlas
Geometric match to IL_1KXK_003
Geometric discrepancy: 0.2567
The information below is about IL_1KXK_003
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

6CZR|1|2A|G|2131
6CZR|1|2A|C|2132
6CZR|1|2A|G|2133
6CZR|1|2A|U|2134
6CZR|1|2A|A|2135
6CZR|1|2A|G|2136
6CZR|1|2A|G|2137
6CZR|1|2A|A|2138
6CZR|1|2A|U|2139
6CZR|1|2A|A|2140
6CZR|1|2A|G|2141
*
6CZR|1|2A|C|2199
6CZR|1|2A|C|2200

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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