IL_6CZR_275

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6CZR|1|2A|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_275 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1311

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6CZR|1|2A|G|2749
6CZR|1|2A|A|2750
6CZR|1|2A|U|2751
6CZR|1|2A|A|2752
6CZR|1|2A|A|2753
6CZR|1|2A|C|2754
*
6CZR|1|2A|G|2774
6CZR|1|2A|G|2775
6CZR|1|2A|A|2776
6CZR|1|2A|A|2777
6CZR|1|2A|G|2778
6CZR|1|2A|C|2779

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13