IL_6CZR_279

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6CZR|1|2B|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_279 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.2716

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6CZR|1|2B|C|17
6CZR|1|2B|G|18
*
6CZR|1|2B|C|65
6CZR|1|2B|A|66
6CZR|1|2B|G|67

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2S

50S ribosomal protein L18

Chain 2Z

50S ribosomal protein L25