IL_6CZR_299

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6CZR|1|2a|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_299 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1345

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6CZR|1|2a|G|405
6CZR|1|2a|G|406
6CZR|1|2a|A|407
6CZR|1|2a|A|408
6CZR|1|2a|G|409
6CZR|1|2a|A|410
6CZR|1|2a|A|411
6CZR|1|2a|G|412
*
6CZR|1|2a|U|423
6CZR|1|2a|G|424
6CZR|1|2a|U|425
6CZR|1|2a|A|426
6CZR|1|2a|A|427
6CZR|1|2a|A|428
6CZR|1|2a|C|429

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4