IL_6CZR_312

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6CZR|1|2a|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_312 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1207

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6CZR|1|2a|G|667
6CZR|1|2a|A|668
6CZR|1|2a|G|669
6CZR|1|2a|U|670
6CZR|1|2a|A|671
6CZR|1|2a|G|672
*
6CZR|1|2a|C|683
6CZR|1|2a|G|684
6CZR|1|2a|C|685
6CZR|1|2a|A|686
6CZR|1|2a|G|687
6CZR|1|2a|A|688
6CZR|1|2a|U|689
6CZR|1|2a|A|690
6CZR|1|2a|C|691

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11