IL_6CZR_316

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6CZR|1|2a|A|1377

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_316 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2636

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6CZR|1|2a|G|900
6CZR|1|2a|A|901
6CZR|1|2a|C|902
*
6CZR|1|2a|G|1375
6CZR|1|2a|U|1376
6CZR|1|2a|A|1377
6CZR|1|2a|C|1378

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2e

30S ribosomal protein S5