3D structure

PDB id
6CZR (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of amicetin bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.14 Å

Loop

Sequence
CCAC*GGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CZR_330 not in the Motif Atlas
Geometric match to IL_5J7L_256
Geometric discrepancy: 0.3316
The information below is about IL_5J7L_256
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

6CZR|1|2a|C|1241
6CZR|1|2a|C|1242
6CZR|1|2a|A|1243
6CZR|1|2a|C|1244
*
6CZR|1|2a|G|1255
6CZR|1|2a|G|1256
6CZR|1|2a|A|1257
6CZR|1|2a|G|1258

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2u
30S ribosomal protein Thx

Coloring options:


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