IL_6CZR_368

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6CZR|1|1a|G|1384
6CZR|1|1a|4OC|1385
6CZR|1|1a|C|1386
6CZR|1|1a|5MC|1387
*
6CZR|1|1a|G|1475
6CZR|1|1a|UR3|1476
6CZR|1|1a|A|1477
6CZR|1|1a|A|1478
6CZR|1|1a|C|1479

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA