IL_6CZR_399

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CCGGGAG*CAGG

Length

11 nucleotides

Bulged bases

6CZR|1|2a|G|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_399 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.377

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6CZR|1|2a|C|1422
6CZR|1|2a|C|1423
6CZR|1|2a|G|1424
6CZR|1|2a|G|1425
6CZR|1|2a|G|1426
6CZR|1|2a|A|1427
6CZR|1|2a|G|1428
*
6CZR|1|2a|C|1437
6CZR|1|2a|A|1438
6CZR|1|2a|G|1439
6CZR|1|2a|G|1440

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20