IL_6CZR_402

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CZR_402 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.1308

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6CZR|1|1A|G|1697
6CZR|1|1A|A|1698
6CZR|1|1A|G|1699
6CZR|1|1A|A|1700
6CZR|1|1A|A|1701
6CZR|1|1A|C|1702
*
6CZR|1|1A|G|2025
6CZR|1|1A|A|2026
6CZR|1|1A|C|2027

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17