IL_6D06_001

3D structure

PDB id

6D06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01312.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

283

Unit IDs

6D06|1|B|G|14
6D06|1|B|A|15
6D06|1|B|G|16
*
6D06|1|C|C|8
6D06|1|C|C|9
6D06|1|C|C|10

Current chains

Chain B

RNA (5'-R(*GP*CP*UP*CP*GP*CP*GP*AP*UP*GP*CP*UP*(8AZ)P*GP*AP*GP*GP*GP*CP*UP*CP*UP*G)-3')

Chain C

RNA (5'-R(*CP*AP*GP*AP*GP*CP*CP*CP*CP*CP*NP*AP*GP*CP*AP*UP*CP*GP*CP*GP*AP*GP*C)-3')

Nearby chains

Chain A

Double-stranded RNA-specific editase 1

Chain D

Double-stranded RNA-specific editase 1