IL_6D8L_007

3D structure

PDB id

6D8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8L_007 not in the Motif Atlas

Geometric match to IL_3IGI_012

Geometric discrepancy: 0.0923

The information below is about IL_3IGI_012

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_95104.1

Basepair signature

cWW-tWH-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

6D8L|1|A|C|223
6D8L|1|A|U|224
6D8L|1|A|A|225
6D8L|1|A|A|226
6D8L|1|A|G|227
*
6D8L|1|A|U|247
6D8L|1|A|A|248
6D8L|1|A|U|249
6D8L|1|A|G|250

Current chains

Chain A

Group I self-splicing intron

Nearby chains

Chain B

Group I self-splicing intron