IL_6D8L_012

3D structure

PDB id

6D8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant U131A (without isopropanol soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

6D8L|1|B|A|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8L_012 not in the Motif Atlas

Geometric match to IL_5TBW_013

Geometric discrepancy: 0.2312

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6D8L|1|B|U|130
6D8L|1|B|A|131
6D8L|1|B|C|132
*
6D8L|1|B|G|191
6D8L|1|B|A|192

Current chains

Chain B

Group I self-splicing intron

Nearby chains

Chain A

Group I self-splicing intron