IL_6D8O_003

3D structure

PDB id

6D8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A230U

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAAG*UAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8O_003 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.1506

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6D8O|1|A|G|112
6D8O|1|A|A|113
6D8O|1|A|A|114
6D8O|1|A|A|115
6D8O|1|A|G|116
*
6D8O|1|A|U|205
6D8O|1|A|A|206
6D8O|1|A|A|207
6D8O|1|A|C|208

Current chains

Chain A

Group I self-splicing intron

Nearby chains