IL_6D8O_009

3D structure

PDB id

6D8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group I self-splicing intron P4-P6 domain mutant A230U

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAUU*AGCC

Length

9 nucleotides

Bulged bases

6D8O|1|B|U|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6D8O_009 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3646

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

6D8O|1|B|G|103
6D8O|1|B|A|104
6D8O|1|B|A|105
6D8O|1|B|U|106
6D8O|1|B|U|107
*
6D8O|1|B|A|214
6D8O|1|B|G|215
6D8O|1|B|C|216
6D8O|1|B|C|217

Current chains

Chain B

Group I self-splicing intron

Nearby chains

Chain A

Group I self-splicing intron