3D structure

PDB id
6DDD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GC*GAC
Length
5 nucleotides
Bulged bases
6DDD|1|1|A|489
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DDD_002 not in the Motif Atlas
Homologous match to IL_7RQB_002
Geometric discrepancy: 0.1279
The information below is about IL_7RQB_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

6DDD|1|1|G|36
6DDD|1|1|C|37
*
6DDD|1|1|G|488
6DDD|1|1|A|489
6DDD|1|1|C|490

Current chains

Chain 1
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L20
Chain S
50S ribosomal protein L4

Coloring options:


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