IL_6DDD_002
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GAC
- Length
- 5 nucleotides
- Bulged bases
- 6DDD|1|1|A|489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_002 not in the Motif Atlas
- Homologous match to IL_7RQB_002
- Geometric discrepancy: 0.1279
- The information below is about IL_7RQB_002
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_37497.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 118
Unit IDs
6DDD|1|1|G|36
6DDD|1|1|C|37
*
6DDD|1|1|G|488
6DDD|1|1|A|489
6DDD|1|1|C|490
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L4
Coloring options: