IL_6DDD_012
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6DDD|1|1|U|549, 6DDD|1|1|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_012 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1608
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6DDD|1|1|G|527
6DDD|1|1|C|528
6DDD|1|1|A|529
6DDD|1|1|C|530
*
6DDD|1|1|G|541
6DDD|1|1|A|542
6DDD|1|1|G|543
6DDD|1|1|U|544
6DDD|1|1|G|545
6DDD|1|1|A|546
6DDD|1|1|A|547
6DDD|1|1|A|548
6DDD|1|1|U|549
6DDD|1|1|A|550
6DDD|1|1|G|551
6DDD|1|1|A|552
6DDD|1|1|A|553
6DDD|1|1|C|554
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L22
- Chain G
- 50S ribosomal protein L24
Coloring options: