3D structure

PDB id
6DDD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAAC*GAGAUAGC
Length
13 nucleotides
Bulged bases
6DDD|1|1|G|846, 6DDD|1|1|G|850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DDD_018 not in the Motif Atlas
Homologous match to IL_4WF9_021
Geometric discrepancy: 0.0848
The information below is about IL_4WF9_021
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_54041.2
Basepair signature
cWW-L-R-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6DDD|1|1|G|719
6DDD|1|1|A|720
6DDD|1|1|A|721
6DDD|1|1|A|722
6DDD|1|1|C|723
*
6DDD|1|1|G|844
6DDD|1|1|A|845
6DDD|1|1|G|846
6DDD|1|1|A|847
6DDD|1|1|U|848
6DDD|1|1|A|849
6DDD|1|1|G|850
6DDD|1|1|C|851

Current chains

Chain 1
23S rRNA

Nearby chains

Chain S
50S ribosomal protein L4
Chain X
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1354 s