IL_6DDD_018
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6DDD|1|1|G|846, 6DDD|1|1|G|850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_018 not in the Motif Atlas
- Homologous match to IL_4WF9_021
- Geometric discrepancy: 0.0848
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DDD|1|1|G|719
6DDD|1|1|A|720
6DDD|1|1|A|721
6DDD|1|1|A|722
6DDD|1|1|C|723
*
6DDD|1|1|G|844
6DDD|1|1|A|845
6DDD|1|1|G|846
6DDD|1|1|A|847
6DDD|1|1|U|848
6DDD|1|1|A|849
6DDD|1|1|G|850
6DDD|1|1|C|851
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain S
- 50S ribosomal protein L4
- Chain X
- 50S ribosomal protein L15
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