IL_6DDD_019

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

6DDD|1|1|A|809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_019 not in the Motif Atlas

Geometric match to IL_5J7L_261

Geometric discrepancy: 0.0884

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6DDD|1|1|U|742
6DDD|1|1|C|743
*
6DDD|1|1|G|808
6DDD|1|1|A|809
6DDD|1|1|A|810

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2