IL_6DDD_034

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6DDD|1|1|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_034 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1379

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6DDD|1|1|U|1062
6DDD|1|1|U|1063
6DDD|1|1|A|1064
6DDD|1|1|A|1065
6DDD|1|1|G|1066
6DDD|1|1|U|1067
6DDD|1|1|G|1068
*
6DDD|1|1|C|1184
6DDD|1|1|U|1185
6DDD|1|1|A|1186
6DDD|1|1|A|1187
6DDD|1|1|A|1188

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36

Chain V

50S ribosomal protein L13