IL_6DDD_042
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_042 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.0859
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6DDD|1|1|G|1300
6DDD|1|1|U|1301
6DDD|1|1|G|1302
6DDD|1|1|A|1303
6DDD|1|1|G|1304
6DDD|1|1|U|1305
6DDD|1|1|A|1306
6DDD|1|1|G|1307
*
6DDD|1|1|U|2038
6DDD|1|1|G|2039
6DDD|1|1|A|2040
6DDD|1|1|A|2041
6DDD|1|1|A|2042
6DDD|1|1|U|2043
6DDD|1|1|C|2044
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L22
- Chain N
- 50S ribosomal protein L32
- Chain S
- 50S ribosomal protein L4
Coloring options: