IL_6DDD_057

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6DDD|1|1|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_057 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.0881

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DDD|1|1|C|1730
6DDD|1|1|G|1731
6DDD|1|1|U|1732
6DDD|1|1|A|1733
6DDD|1|1|A|1734
6DDD|1|1|C|1735
*
6DDD|1|1|G|1740
6DDD|1|1|G|1741
6DDD|1|1|A|1742
6DDD|1|1|G|1743
6DDD|1|1|A|1744
6DDD|1|1|A|1745
6DDD|1|1|G|1746

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2