IL_6DDD_060

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

6DDD|1|1|U|1828, 6DDD|1|1|U|1843, 6DDD|1|1|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_060 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0967

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6DDD|1|1|U|1825
6DDD|1|1|G|1826
6DDD|1|1|C|1827
6DDD|1|1|U|1828
6DDD|1|1|A|1829
6DDD|1|1|A|1830
6DDD|1|1|A|1831
*
6DDD|1|1|U|1840
6DDD|1|1|G|1841
6DDD|1|1|A|1842
6DDD|1|1|U|1843
6DDD|1|1|G|1844
6DDD|1|1|U|1845
6DDD|1|1|A|1846
6DDD|1|1|U|1847
6DDD|1|1|A|1848

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2