IL_6DDD_061

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6DDD|1|1|C|1865

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_061 not in the Motif Atlas

Homologous match to IL_4WF9_070

Geometric discrepancy: 0.198

The information below is about IL_4WF9_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDD|1|1|C|1864
6DDD|1|1|C|1865
6DDD|1|1|G|1866
6DDD|1|1|G|1867
*
6DDD|1|1|C|1929
6DDD|1|1|G|1930

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2