IL_6DDD_062
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*UAAA
- Length
- 6 nucleotides
- Bulged bases
- 6DDD|1|1|A|1926, 6DDD|1|1|A|1927
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_062 not in the Motif Atlas
- Homologous match to IL_7A0S_067
- Geometric discrepancy: 0.1913
- The information below is about IL_7A0S_067
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_66635.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 27
Unit IDs
6DDD|1|1|U|1868
6DDD|1|1|G|1869
*
6DDD|1|1|U|1925
6DDD|1|1|A|1926
6DDD|1|1|A|1927
6DDD|1|1|A|1928
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
Coloring options: