IL_6DDD_062

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6DDD|1|1|A|1926, 6DDD|1|1|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_062 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.1913

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6DDD|1|1|U|1868
6DDD|1|1|G|1869
*
6DDD|1|1|U|1925
6DDD|1|1|A|1926
6DDD|1|1|A|1927
6DDD|1|1|A|1928

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2