IL_6DDD_077

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_077 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0945

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6DDD|1|1|C|2377
6DDD|1|1|G|2378
6DDD|1|1|A|2379
6DDD|1|1|G|2380
*
6DDD|1|1|C|2391
6DDD|1|1|G|2392
6DDD|1|1|A|2393
6DDD|1|1|G|2394

Current chains

Chain 1

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L27

Chain Q

50S ribosomal protein L35