IL_6DDD_082

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_082 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1354

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6DDD|1|1|A|2486
6DDD|1|1|U|2487
6DDD|1|1|C|2488
*
6DDD|1|1|G|2516
6DDD|1|1|G|2517
6DDD|1|1|U|2518
6DDD|1|1|U|2519
6DDD|1|1|U|2520

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16