IL_6DDD_083
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDD_083 not in the Motif Atlas
- Homologous match to IL_4WF9_093
- Geometric discrepancy: 0.1287
- The information below is about IL_4WF9_093
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6DDD|1|1|C|2493
6DDD|1|1|C|2494
6DDD|1|1|A|2495
6DDD|1|1|A|2496
6DDD|1|1|G|2497
*
6DDD|1|1|C|2507
6DDD|1|1|G|2508
6DDD|1|1|A|2509
6DDD|1|1|C|2510
6DDD|1|1|G|2511
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L36
- Chain Y
- 50S ribosomal protein L16
Coloring options: