IL_6DDD_107

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UGAUGG

Length

11 nucleotides

Bulged bases

6DDD|1|1|G|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_107 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.2912

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6DDD|1|1|C|1511
6DDD|1|1|U|1512
6DDD|1|1|A|1513
6DDD|1|1|A|1514
6DDD|1|1|G|1515
*
6DDD|1|1|U|1565
6DDD|1|1|G|1566
6DDD|1|1|A|1567
6DDD|1|1|U|1568
6DDD|1|1|G|1569
6DDD|1|1|G|1570

Current chains

Chain 1

23S rRNA

Nearby chains